Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDLCPGLJ_11 | 60659 | 61363 | WalR | 2.00e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HDLCPGLJ_49 | 256 | 62 | CspR | 2.52e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HDLCPGLJ_49 | 256 | 59 | CspA | 3.86e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HDLCPGLJ_71 | 587 | 1522 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDLCPGLJ_1 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_2 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_3 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_4 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_5 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_6 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_7 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_8 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_9 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_10 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_11 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_12 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_13 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_14 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_15 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_16 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_17 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_18 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_19 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_20 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_21 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_22 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_23 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_24 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_25 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_26 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_27 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_28 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_29 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_30 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_31 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_32 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_33 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_34 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_35 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_36 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_37 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_38 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_39 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_40 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_41 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_42 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_43 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_44 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_45 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_46 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_47 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_48 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_49 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_50 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_51 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_52 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_53 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_54 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_55 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_56 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_57 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_59 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_60 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_61 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_62 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_63 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_64 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_66 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_67 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_68 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_70 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_71 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_72 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_73 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_74 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_75 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_76 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_77 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_78 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_79 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_80 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_81 | 1.0 | 0.0 | 1.0 |
| HDLCPGLJ_82 | 0.0 | 1.0 | 0.0 |
| HDLCPGLJ_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDLCPGLJ_4 | 61155 | 77191 | False | Siphoviridae | VOG0322, VOG6545, VOG0514, VOG8647, VOG0189, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586 |
| HDLCPGLJ_17 | 7243 | 38685 | False | Siphoviridae | VOG8925, VOG11016, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG10004, VOG0044, VOG9671, VOG4673, VOG5495, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| HDLCPGLJ_66 | 10018 | 13457 | False | Siphoviridae | VOG1648, VOG4602, VOG6495, VOG6495, VOG0181 |
| HDLCPGLJ_66 | 22652 | 41303 | False | Siphoviridae | VOG5616, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619 |
Phigaro v2.4.0 (Database: Jan. 2024 release)