Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JDDEHGPK_46 | 11989 | 12690 | WalR | 2.88e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JDDEHGPK_77 | 4040 | 4969 | rep28 | 930 / 930 | 98.60 | CP003162 |
| JDDEHGPK_36 | 1270 | 2337 | repUS73 | 1069 / 1101 | 95.79 | CP002654 |
| JDDEHGPK_85 | 2120 | 3075 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDDEHGPK_1 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_2 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_3 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_4 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_5 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_6 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_7 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_8 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_10 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_11 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_12 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_13 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_14 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_15 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_16 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_17 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_18 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_19 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_20 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_21 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_22 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_23 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_24 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_25 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_26 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_27 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_28 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_29 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_30 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_31 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_32 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_33 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_34 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_35 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_36 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_37 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_38 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_39 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_40 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_41 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_42 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_43 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_44 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_45 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_46 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_47 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_48 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_49 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_50 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_51 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_52 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_53 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_54 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_55 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_56 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_57 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_58 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_59 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_60 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_61 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_62 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_63 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_64 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_65 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_66 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_67 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_68 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_69 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_70 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_71 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_72 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_73 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_74 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_75 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_76 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_77 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_78 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_79 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_80 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_81 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_82 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_83 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_84 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_85 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_86 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_87 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_88 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_89 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_91 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_92 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_93 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_94 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_95 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_96 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_97 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_98 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_99 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_100 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_101 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_102 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_103 | 0.0 | 1.0 | 0.0 |
| JDDEHGPK_105 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_106 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_107 | 1.0 | 0.0 | 1.0 |
| JDDEHGPK_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDDEHGPK_15 | 517 | 27205 | False | Myoviridae | VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG4699, VOG0045, VOG0638, VOG0198, VOG4010 |
| JDDEHGPK_15 | 28620 | 33352 | False | Unknown | VOG6256, VOG4693, VOG7236, VOG4855, VOG0186 |
| JDDEHGPK_41 | 5868 | 22023 | False | Siphoviridae | VOG0275, VOG9667, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908 |
Phigaro v2.4.0 (Database: Jan. 2024 release)