Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FIFOFKIN_33 | 8442 | 7741 | WalR | 3.42e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FIFOFKIN_42 | 3102 | 4169 | repUS73 | 1068 / 1101 | 95.88 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FIFOFKIN_2 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_3 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_4 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_5 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_6 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_7 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_8 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_9 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_10 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_11 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_12 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_13 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_14 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_15 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_16 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_17 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_18 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_19 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_20 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_21 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_22 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_23 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_24 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_25 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_26 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_27 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_28 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_29 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_30 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_31 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_32 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_33 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_34 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_35 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_36 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_37 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_38 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_39 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_40 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_41 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_42 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_43 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_44 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_45 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_46 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_47 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_48 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_49 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_50 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_51 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_52 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_53 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_54 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_55 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_56 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_57 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_58 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_59 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_60 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_61 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_62 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_63 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_64 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_65 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_66 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_67 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_68 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_69 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_70 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_71 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_72 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_73 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_74 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_75 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_76 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_77 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_78 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_79 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_80 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_81 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_82 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_83 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_85 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_86 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_87 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_88 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_89 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_90 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_91 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_92 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_93 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_94 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_96 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_98 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_99 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_100 | 0.0 | 1.0 | 0.0 |
| FIFOFKIN_101 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_102 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_103 | 1.0 | 0.0 | 1.0 |
| FIFOFKIN_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FIFOFKIN_14 | 5949 | 40302 | False | Myoviridae | VOG1026, VOG0321, VOG0283, VOG0226, VOG0514, VOG4799, VOG0189, VOG0052, VOG0195, VOG0044, VOG4732, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG5904, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
| FIFOFKIN_25 | 4432 | 16181 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| FIFOFKIN_71 | 6184 | 53095 | False | Myoviridae | VOG0792, VOG8483, VOG0862, VOG6495, VOG1656, VOG4552, VOG5735, VOG0650, VOG0685, VOG0322, VOG6545, VOG10904, VOG4799, VOG0025, VOG0514, VOG6005, VOG0822, VOG0044, VOG0536, VOG3643, VOG0102, VOG0586, VOG0198, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG0696, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG5706, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691, VOG4845, VOG7589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)