Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GAMCEEKO_64 | 69209 | 68505 | WalR | 7.17e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GAMCEEKO_48 | 7095 | 7289 | CspR | 9.31e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GAMCEEKO_48 | 7095 | 7292 | CspA | 1.43e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GAMCEEKO_53 | 16294 | 17195 | rep38 | 902 / 903 | 95.34 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GAMCEEKO_1 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_2 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_3 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_4 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_6 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_9 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_11 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_14 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_16 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_17 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_19 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_20 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_21 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_22 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_23 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_24 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_25 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_26 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_27 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_28 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_29 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_30 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_31 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_32 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_33 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_34 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_35 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_36 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_37 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_38 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_39 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_40 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_41 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_42 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_43 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_44 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_45 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_46 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_47 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_48 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_49 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_50 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_51 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_52 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_53 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_54 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_55 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_56 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_57 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_58 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_59 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_60 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_61 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_62 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_63 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_64 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_65 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_66 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_67 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_68 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_69 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_70 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_71 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_72 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_73 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_74 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_75 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_76 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_77 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_78 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_79 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_80 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_81 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_82 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_83 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_84 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_85 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_86 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_87 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_88 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_89 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_90 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_91 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_92 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_94 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_95 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_96 | 0.0 | 1.0 | 0.0 |
| GAMCEEKO_98 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_99 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_100 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_101 | 1.0 | 0.0 | 1.0 |
| GAMCEEKO_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GAMCEEKO_34 | 1127 | 22252 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| GAMCEEKO_34 | 27230 | 34997 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8925, VOG8222 |
| GAMCEEKO_44 | 100160 | 126683 | False | Siphoviridae | VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0198, VOG1049 |
Phigaro v2.4.0 (Database: Jan. 2024 release)