Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AOEJOGMP_22 | 237493 | 238197 | WalR | 3.05e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| AOEJOGMP_6 | 63343 | 63149 | CspR | 3.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| AOEJOGMP_6 | 63343 | 63146 | CspA | 4.77e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AOEJOGMP_15 | 37220 | 38122 | rep38 | 903 / 903 | 99.34 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AOEJOGMP_1 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_2 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_3 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_4 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_5 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_6 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_7 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_8 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_9 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_10 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_11 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_12 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_13 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_14 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_15 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_16 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_17 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_18 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_19 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_20 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_21 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_22 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_23 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_24 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_25 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_26 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_27 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_28 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_29 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_30 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_31 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_32 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_33 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_34 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_35 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_36 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_37 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_39 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_40 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_41 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_42 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_43 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_44 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_46 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_47 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_48 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_49 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_50 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_51 | 1.0 | 0.0 | 1.0 |
| AOEJOGMP_52 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_53 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_54 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_55 | 0.0 | 1.0 | 0.0 |
| AOEJOGMP_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AOEJOGMP_16 | 11216 | 37315 | False | Siphoviridae | VOG9667, VOG1309, VOG0186, VOG4566, VOG4693, VOG0822, VOG0044, VOG0198, VOG0437, VOG0045, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334 |
| AOEJOGMP_24 | 1 | 16531 | False | Siphoviridae | VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
Phigaro v2.4.0 (Database: Jan. 2024 release)