Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPFLCPNM_59 | 19642 | 19839 | CspR | 2.62e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PPFLCPNM_59 | 19642 | 19839 | CspA | 5.23e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPFLCPNM_1 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_2 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_3 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_4 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_5 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_7 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_8 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_9 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_10 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_11 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_12 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_13 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_14 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_15 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_16 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_17 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_18 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_19 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_20 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_21 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_22 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_23 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_24 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_25 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_26 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_27 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_28 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_29 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_30 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_31 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_32 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_33 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_34 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_35 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_36 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_37 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_38 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_39 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_40 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_41 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_42 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_43 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_44 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_45 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_46 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_47 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_48 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_49 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_50 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_51 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_52 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_53 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_54 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_55 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_56 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_57 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_58 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_59 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_60 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_61 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_62 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_63 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_64 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_65 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_66 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_67 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_68 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_69 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_70 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_71 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_72 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_73 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_74 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_75 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_76 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_77 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_78 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_79 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_80 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_81 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_82 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_83 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_84 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_85 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_86 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_87 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_88 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_89 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_90 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_91 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_92 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_93 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_94 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_95 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_96 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_97 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_98 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_99 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_100 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_101 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_102 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_103 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_104 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_105 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_106 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_107 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_108 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_109 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_110 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_111 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_112 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_113 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_114 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_115 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_116 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_117 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_118 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_119 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_121 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_122 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_123 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_124 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_125 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_126 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_127 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_128 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_129 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_130 | 1.0 | 0.0 | 1.0 |
| PPFLCPNM_131 | 0.0 | 1.0 | 0.0 |
| PPFLCPNM_132 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPFLCPNM_88 | 3050 | 13001 | False | Unknown | VOG8685, VOG0327, VOG4606, VOG6545, VOG4548, VOG0322, VOG0321, VOG2228, VOG9667, VOG9667, VOG0862, VOG9267 |
Phigaro v2.4.0 (Database: Jan. 2024 release)