Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CIKCDBIG_11 | 58331 | 57627 | WalR | 4.05e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CIKCDBIG_18 | 13637 | 13834 | CspR | 6.26e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIKCDBIG_1 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_2 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_3 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_4 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_5 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_6 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_7 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_8 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_9 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_10 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_11 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_12 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_13 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_14 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_15 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_16 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_17 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_18 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_19 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_20 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_21 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_22 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_23 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_24 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_25 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_26 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_27 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_28 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_29 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_30 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_31 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_32 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_33 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_34 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_35 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_36 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_37 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_38 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_39 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_40 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_41 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_42 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_43 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_44 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_45 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_46 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_47 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_48 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_49 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_50 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_51 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_52 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_53 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_54 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_55 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_56 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_57 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_58 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_59 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_60 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_63 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_64 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_65 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_66 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_67 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_69 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_70 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_71 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_72 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_73 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_75 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_76 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_77 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_78 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_79 | 1.0 | 0.0 | 1.0 |
| CIKCDBIG_80 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_81 | 0.0 | 1.0 | 0.0 |
| CIKCDBIG_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIKCDBIG_3 | 78414 | 89430 | False | Siphoviridae | VOG0862, VOG8520, VOG5353, VOG3691, VOG7236, VOG0181, VOG10867, VOG9020, VOG6450, VOG4967, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG5998 |
| CIKCDBIG_4 | 81327 | 89064 | False | Siphoviridae | VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4566, VOG0189, VOG7018, VOG9860, VOG0536 |
| CIKCDBIG_14 | 38801 | 42622 | False | Siphoviridae | VOG0806, VOG4322, VOG9589, VOG1309 |
| CIKCDBIG_18 | 35725 | 41895 | False | Unknown | VOG8241, VOG1309, VOG0186, VOG4566, VOG0226, VOG10904, VOG11003, VOG9860 |
| CIKCDBIG_22 | 173755 | 196310 | False | Siphoviridae | VOG4649, VOG0703, VOG7017, VOG0861, VOG4599, VOG4605, VOG7316, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841 |
| CIKCDBIG_25 | 4335 | 27465 | False | Siphoviridae | VOG4615, VOG0054, VOG6540, VOG9805, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796 |
| CIKCDBIG_27 | 18073 | 25857 | False | Siphoviridae | VOG4602, VOG6495, VOG5353, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189 |
| CIKCDBIG_32 | 2404 | 23480 | False | Siphoviridae | VOG0602, VOG7017, VOG0861, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG0637, VOG1183, VOG4564, VOG0720, VOG10227, VOG0796 |
| CIKCDBIG_33 | 1552 | 21224 | False | Siphoviridae | VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG4705, VOG0861, VOG7017, VOG0703, VOG4918 |
| CIKCDBIG_82 | 36002 | 42095 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG1886, VOG1886, VOG5051, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)