Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CEDBCKDO_78 | 14102 | 13398 | WalR | 5.21e-106 | transcriptional regulatory protein | 82.13 | 100.00 | EPH95667 |
| CEDBCKDO_72 | 6213 | 6016 | CspR | 3.14e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CEDBCKDO_18 | 1 | 467 | repUS54 | 468 / 690 | 84.19 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEDBCKDO_1 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_2 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_3 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_4 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_5 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_6 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_7 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_8 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_9 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_10 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_11 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_12 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_13 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_14 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_15 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_17 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_18 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_19 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_20 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_22 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_23 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_24 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_25 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_26 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_27 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_28 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_29 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_30 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_31 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_32 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_33 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_34 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_35 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_36 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_37 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_38 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_39 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_40 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_41 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_42 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_43 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_44 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_45 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_46 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_47 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_48 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_49 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_50 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_51 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_52 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_53 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_54 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_55 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_56 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_57 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_58 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_59 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_60 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_61 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_62 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_63 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_64 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_65 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_66 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_67 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_68 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_69 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_70 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_71 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_72 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_73 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_74 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_75 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_76 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_77 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_78 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_79 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_80 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_81 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_82 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_83 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_84 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_85 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_86 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_87 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_88 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_89 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_90 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_91 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_92 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_93 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_94 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_95 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_96 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_97 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_98 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_99 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_100 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_101 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_102 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_103 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_104 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_105 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_106 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_107 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_108 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_109 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_110 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_111 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_112 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_113 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_114 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_115 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_116 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_117 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_118 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_119 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_120 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_121 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_122 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_123 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_124 | 0.0 | 1.0 | 0.0 |
| CEDBCKDO_125 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_126 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_128 | 1.0 | 0.0 | 1.0 |
| CEDBCKDO_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEDBCKDO_47 | 597 | 22791 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG10303, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG4605, VOG4605, VOG4599, VOG6455, VOG0861, VOG7017, VOG0703 |
| CEDBCKDO_50 | 43904 | 49750 | False | Siphoviridae | VOG4632, VOG4606, VOG4841, VOG4581 |
| CEDBCKDO_69 | 90 | 19249 | False | Siphoviridae | VOG0637, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918 |
| CEDBCKDO_71 | 2133 | 5977 | False | Unknown | VOG9500, VOG6179, VOG6495, VOG7236, VOG8241 |
| CEDBCKDO_129 | 66804 | 73848 | False | Siphoviridae | VOG0275, VOG6914, VOG6495, VOG11003, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642 |
Phigaro v2.4.0 (Database: Jan. 2024 release)