Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPNMMHEL_38 | 28768 | 28064 | WalR | 3.72e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LPNMMHEL_109 | 67653 | 67456 | CspR | 1.24e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPNMMHEL_1 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_2 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_3 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_4 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_5 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_6 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_7 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_8 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_9 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_10 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_11 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_12 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_13 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_14 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_15 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_16 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_17 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_18 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_20 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_21 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_22 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_23 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_24 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_25 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_26 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_27 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_28 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_29 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_30 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_31 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_32 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_33 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_34 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_35 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_36 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_37 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_38 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_39 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_40 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_41 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_42 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_43 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_44 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_45 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_46 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_47 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_48 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_49 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_50 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_51 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_52 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_53 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_54 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_55 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_56 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_57 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_58 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_59 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_60 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_61 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_62 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_63 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_64 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_65 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_66 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_67 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_68 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_69 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_70 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_71 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_72 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_73 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_74 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_75 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_76 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_77 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_78 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_79 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_80 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_81 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_82 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_83 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_84 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_85 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_86 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_87 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_88 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_89 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_90 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_91 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_92 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_93 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_94 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_95 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_96 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_97 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_98 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_99 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_100 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_101 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_102 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_103 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_104 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_105 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_106 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_107 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_108 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_109 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_110 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_111 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_112 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_113 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_114 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_115 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_116 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_117 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_118 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_119 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_120 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_121 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_122 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_123 | 0.0 | 1.0 | 0.0 |
| LPNMMHEL_124 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_125 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_126 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_127 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_128 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_130 | 1.0 | 0.0 | 1.0 |
| LPNMMHEL_131 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPNMMHEL_11 | 22788 | 58071 | False | Siphoviridae | VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1300, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG1563, VOG5733, VOG1183, VOG3643, VOG2820, VOG9741, VOG0536, VOG9860, VOG11003, VOG10904, VOG0226, VOG4566, VOG9438, VOG0186, VOG1309 |
| LPNMMHEL_76 | 84024 | 107303 | False | Siphoviridae | VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG0198, VOG5562, VOG6795, VOG5998, VOG4609 |
| LPNMMHEL_120 | 38689 | 48941 | False | Siphoviridae | VOG4632, VOG4606, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)