Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGKKAAJD_11 | 320478 | 319774 | WalR | 2.11e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GGKKAAJD_13 | 46107 | 45913 | CspR | 2.28e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GGKKAAJD_13 | 46107 | 45910 | CspA | 3.49e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GGKKAAJD_65 | 587 | 1522 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGKKAAJD_1 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_2 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_3 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_4 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_5 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_6 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_7 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_8 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_9 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_10 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_11 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_12 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_13 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_14 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_15 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_16 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_17 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_18 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_19 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_20 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_21 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_22 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_23 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_24 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_25 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_26 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_27 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_28 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_29 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_30 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_31 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_32 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_33 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_34 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_35 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_36 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_37 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_38 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_39 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_40 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_41 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_42 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_43 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_44 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_45 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_46 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_47 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_48 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_49 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_50 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_51 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_52 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_53 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_54 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_55 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_56 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_58 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_59 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_61 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_62 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_64 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_65 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_66 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_67 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_68 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_69 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_70 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_71 | 1.0 | 0.0 | 1.0 |
| GGKKAAJD_72 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_73 | 0.0 | 1.0 | 0.0 |
| GGKKAAJD_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGKKAAJD_3 | 10556 | 26592 | False | Siphoviridae | VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG0189, VOG8647, VOG0514, VOG6545 |
| GGKKAAJD_19 | 7243 | 38685 | False | Siphoviridae | VOG8925, VOG11016, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG10004, VOG0044, VOG9671, VOG4673, VOG5495, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| GGKKAAJD_66 | 10102 | 13541 | False | Siphoviridae | VOG1648, VOG4602, VOG6495, VOG6495, VOG0181 |
| GGKKAAJD_66 | 22736 | 41387 | False | Siphoviridae | VOG5616, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619 |
Phigaro v2.4.0 (Database: Jan. 2024 release)