Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPCGBEAE_56 | 42434 | 42631 | CspA | 1.46e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LPCGBEAE_56 | 42434 | 42628 | CspR | 1.24e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPCGBEAE_1 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_2 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_3 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_4 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_5 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_6 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_7 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_8 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_9 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_10 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_11 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_12 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_13 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_14 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_15 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_16 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_17 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_18 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_19 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_20 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_21 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_22 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_23 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_24 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_25 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_26 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_27 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_28 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_29 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_30 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_31 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_32 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_33 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_34 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_35 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_36 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_37 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_38 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_39 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_40 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_41 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_42 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_43 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_44 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_45 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_46 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_47 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_48 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_49 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_50 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_51 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_52 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_53 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_54 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_55 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_56 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_57 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_58 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_59 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_60 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_61 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_62 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_63 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_64 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_65 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_66 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_67 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_68 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_69 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_70 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_71 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_72 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_73 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_74 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_75 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_76 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_77 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_78 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_79 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_80 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_81 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_82 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_83 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_84 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_85 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_86 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_87 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_88 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_89 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_91 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_92 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_93 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_94 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_95 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_96 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_97 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_98 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_99 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_100 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_101 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_103 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_104 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_105 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_106 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_107 | 0.0 | 1.0 | 0.0 |
| LPCGBEAE_108 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_109 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_110 | 1.0 | 0.0 | 1.0 |
| LPCGBEAE_111 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPCGBEAE_32 | 930 | 20171 | False | Siphoviridae | VOG10227, VOG0720, VOG4564, VOG1300, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG0648, VOG0641 |
| LPCGBEAE_41 | 1198 | 18070 | False | Siphoviridae | VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641 |
| LPCGBEAE_89 | 45821 | 53860 | False | Siphoviridae | VOG0275, VOG4585, VOG1159, VOG4677 |
Phigaro v2.4.0 (Database: Jan. 2024 release)