Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PIEMDFDJ_33 | 123081 | 123785 | WalR | 2.39e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PIEMDFDJ_87 | 8461 | 8658 | CspR | 6.61e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PIEMDFDJ_1 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_2 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_3 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_4 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_5 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_6 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_7 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_8 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_9 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_10 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_11 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_12 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_13 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_14 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_15 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_16 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_17 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_18 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_19 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_20 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_21 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_22 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_23 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_24 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_25 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_26 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_27 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_28 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_29 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_30 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_31 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_32 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_33 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_34 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_35 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_36 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_37 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_38 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_39 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_40 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_41 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_42 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_43 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_44 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_45 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_46 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_47 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_48 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_49 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_50 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_51 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_52 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_53 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_54 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_55 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_56 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_58 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_59 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_60 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_61 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_62 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_63 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_64 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_65 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_66 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_68 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_69 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_70 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_71 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_72 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_73 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_74 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_76 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_77 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_78 | 1.0 | 0.0 | 1.0 |
| PIEMDFDJ_86 | 0.0 | 1.0 | 0.0 |
| PIEMDFDJ_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PIEMDFDJ_11 | 9123 | 32680 | False | Siphoviridae | VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495, VOG0275 |
| PIEMDFDJ_25 | 2815 | 16067 | False | Siphoviridae | VOG3304, VOG7656, VOG0862, VOG8520, VOG5353, VOG4552, VOG0181, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG10904, VOG4566, VOG0189, VOG9860, VOG6623, VOG4693, VOG9741, VOG9759, VOG3643, VOG3643, VOG0044 |
| PIEMDFDJ_27 | 2 | 18641 | False | Siphoviridae | VOG1886, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4633, VOG4828, VOG4660, VOG1637, VOG0054 |
| PIEMDFDJ_55 | 24415 | 34600 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)