Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COOCGKJM_15 | 42052 | 42756 | WalR | 3.76e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| COOCGKJM_33 | 13607 | 13410 | CspR | 3.23e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COOCGKJM_7 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_8 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_9 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_10 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_11 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_12 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_13 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_14 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_15 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_16 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_17 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_18 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_19 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_20 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_21 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_22 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_23 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_24 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_25 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_26 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_27 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_28 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_29 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_30 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_31 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_32 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_33 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_34 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_35 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_36 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_37 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_38 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_39 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_40 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_41 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_42 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_43 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_44 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_45 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_46 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_47 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_48 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_49 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_50 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_51 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_52 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_53 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_54 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_55 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_56 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_57 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_58 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_59 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_60 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_61 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_62 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_63 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_64 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_65 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_67 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_68 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_69 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_70 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_71 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_72 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_73 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_74 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_75 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_76 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_77 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_78 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_80 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_81 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_82 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_83 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_84 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_85 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_86 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_87 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_88 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_89 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_90 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_91 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_92 | 1.0 | 0.0 | 1.0 |
| COOCGKJM_94 | 0.0 | 1.0 | 0.0 |
| COOCGKJM_105 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COOCGKJM_10 | 6462 | 15296 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
| COOCGKJM_19 | 274 | 35772 | False | Siphoviridae | VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG3307, VOG3643, VOG0152, VOG4693, VOG6623, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309, VOG8241, VOG6495, VOG11003 |
Phigaro v2.4.0 (Database: Jan. 2024 release)