Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NBDHJGNJ_51 | 103195 | 102491 | WalR | 1.79e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NBDHJGNJ_1 | 84954 | 84757 | CspR | 7.17e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBDHJGNJ_1 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_2 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_3 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_4 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_5 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_6 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_7 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_8 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_9 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_10 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_11 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_12 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_13 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_14 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_15 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_16 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_17 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_18 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_19 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_20 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_21 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_22 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_23 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_24 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_25 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_26 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_27 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_28 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_30 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_31 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_33 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_34 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_35 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_36 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_37 | 1.0 | 0.0 | 1.0 |
| NBDHJGNJ_44 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_47 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_48 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_49 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_50 | 0.0 | 1.0 | 0.0 |
| NBDHJGNJ_51 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NBDHJGNJ_8 | 11726 | 23572 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| NBDHJGNJ_9 | 1766 | 38941 | False | Siphoviridae | VOG9312, VOG6495, VOG3622, VOG10917, VOG4552, VOG0807, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG4813, VOG9759, VOG2820, VOG3643, VOG3643, VOG0044, VOG0198, VOG4570, VOG4549, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG9975, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG4705, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)