Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GDHHKMLE_176 | 6209 | 5505 | WalR | 4.72e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GDHHKMLE_166 | 8815 | 9012 | CspR | 3.51e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GDHHKMLE_43 | 1167 | 2228 | repUS74 | 1063 / 1062 | 95.11 | CP000424 |
| GDHHKMLE_35 | 1740 | 2335 | rep38 | 597 / 903 | 90.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GDHHKMLE_1 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_2 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_3 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_4 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_5 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_6 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_7 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_8 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_9 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_10 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_11 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_12 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_13 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_14 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_15 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_16 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_17 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_18 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_19 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_20 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_21 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_22 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_23 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_24 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_25 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_26 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_27 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_28 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_29 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_30 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_31 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_32 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_33 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_34 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_35 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_36 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_37 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_39 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_40 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_41 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_42 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_43 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_44 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_45 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_46 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_48 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_49 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_50 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_51 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_52 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_53 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_54 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_55 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_56 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_57 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_58 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_59 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_61 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_62 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_63 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_64 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_65 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_66 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_67 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_68 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_69 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_70 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_71 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_72 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_73 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_74 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_75 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_76 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_77 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_78 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_79 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_80 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_81 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_82 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_83 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_84 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_85 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_86 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_87 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_88 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_89 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_90 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_91 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_92 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_93 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_94 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_96 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_97 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_98 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_99 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_100 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_101 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_102 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_103 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_104 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_105 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_106 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_107 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_108 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_109 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_110 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_111 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_112 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_113 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_114 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_115 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_116 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_117 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_118 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_119 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_120 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_121 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_122 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_123 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_124 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_125 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_126 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_127 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_128 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_129 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_130 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_131 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_132 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_133 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_134 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_135 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_136 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_137 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_138 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_139 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_140 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_141 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_142 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_143 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_144 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_145 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_146 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_147 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_148 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_149 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_150 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_151 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_152 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_153 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_154 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_155 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_156 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_157 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_158 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_159 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_160 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_161 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_162 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_163 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_164 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_165 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_166 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_167 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_168 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_169 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_170 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_171 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_172 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_173 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_174 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_175 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_176 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_177 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_178 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_179 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_180 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_181 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_182 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_183 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_184 | 0.0 | 1.0 | 0.0 |
| GDHHKMLE_185 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_186 | 1.0 | 0.0 | 1.0 |
| GDHHKMLE_187 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GDHHKMLE_110 | 23 | 33846 | False | Siphoviridae | VOG4605, VOG6163, VOG5852, VOG5601, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG4549, VOG4570, VOG0198, VOG1563, VOG0044, VOG1298, VOG3643, VOG0152, VOG9741, VOG4693, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG6428, VOG10059, VOG5353, VOG8520, VOG0862, VOG7656, VOG0371, VOG6415, VOG9860, VOG0275 |
| GDHHKMLE_112 | 2 | 20369 | False | Siphoviridae | VOG4599, VOG4605, VOG3636, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699 |
| GDHHKMLE_116 | 2105 | 9286 | False | Unknown | VOG0536, VOG7018, VOG0189, VOG4855, VOG0186, VOG1309, VOG2338, VOG6495, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)