Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HPBPNCNG_83 | 20555 | 21256 | WalR | 4.13e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HPBPNCNG_129 | 1275 | 2199 | repUS64 | 930 / 954 | 85.48 | JN601038 |
| HPBPNCNG_97 | 7577 | 8537 | repUS73 | 977 / 1101 | 81.78 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPBPNCNG_1 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_2 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_11 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_22 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_33 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_44 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_55 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_64 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_65 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_66 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_67 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_68 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_69 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_70 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_71 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_72 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_73 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_74 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_75 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_76 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_77 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_78 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_79 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_80 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_81 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_82 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_83 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_84 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_85 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_86 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_87 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_88 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_89 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_90 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_91 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_92 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_93 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_94 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_95 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_96 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_97 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_98 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_99 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_100 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_101 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_102 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_103 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_104 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_105 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_106 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_107 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_108 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_109 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_110 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_111 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_112 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_113 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_114 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_115 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_116 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_117 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_118 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_119 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_121 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_122 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_123 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_124 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_125 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_126 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_127 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_128 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_129 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_130 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_131 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_132 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_133 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_134 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_135 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_136 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_138 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_139 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_142 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_143 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_144 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_145 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_146 | 0.0 | 1.0 | 0.0 |
| HPBPNCNG_147 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_148 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_149 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_150 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_151 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_152 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_153 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_154 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_155 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_156 | 1.0 | 0.0 | 1.0 |
| HPBPNCNG_157 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPBPNCNG_71 | 8387 | 40100 | True | Myoviridae | VOG0283, VOG0226, VOG10904, VOG0514, VOG4799, VOG0189, VOG0052, VOG0822, VOG0198, VOG5532, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG4910, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG6282, VOG1026 |
| HPBPNCNG_135 | 6047 | 38650 | False | Myoviridae | VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG4699, VOG1352, VOG1883, VOG1353, VOG5795, VOG1329, VOG4564, VOG0720, VOG8453, VOG7407, VOG0611, VOG10144, VOG5343, VOG3691, VOG0198, VOG0044, VOG6005, VOG4693, VOG7236, VOG0186 |
Phigaro v2.4.0 (Database: Jan. 2024 release)