Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MACEPOKG_42 | 97456 | 98160 | WalR | 9.98e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MACEPOKG_11 | 20489 | 20686 | CspR | 5.40e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MACEPOKG_1 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_2 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_3 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_4 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_5 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_6 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_7 | 1.0 | 0.0 | 1.0 |
| MACEPOKG_8 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_9 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_10 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_11 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_13 | 1.0 | 0.0 | 1.0 |
| MACEPOKG_22 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_33 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_37 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_38 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_39 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_40 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_41 | 0.0 | 1.0 | 0.0 |
| MACEPOKG_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MACEPOKG_1 | 86452 | 121260 | False | Siphoviridae | VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG4549, VOG4570, VOG9741, VOG0198, VOG0047, VOG0982, VOG0189, VOG4799, VOG3642, VOG10867, VOG0181, VOG0697, VOG5353 |
| MACEPOKG_11 | 43791 | 48099 | False | Unknown | VOG1309, VOG0186, VOG4566, VOG0226, VOG9860 |
| MACEPOKG_11 | 51395 | 75753 | False | Siphoviridae | VOG0198, VOG4570, VOG3699, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG7888, VOG0703, VOG4918 |
| MACEPOKG_42 | 18158 | 28621 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)