Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDDOIEPM_47 | 67471 | 68175 | WalR | 9.08e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EDDOIEPM_58 | 14052 | 13858 | CspR | 6.77e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EDDOIEPM_58 | 14052 | 13855 | CspA | 1.04e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EDDOIEPM_70 | 4680 | 5609 | rep28 | 930 / 930 | 98.82 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDDOIEPM_1 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_11 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_16 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_17 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_18 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_19 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_20 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_21 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_22 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_23 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_24 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_25 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_26 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_27 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_28 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_29 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_30 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_31 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_32 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_33 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_34 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_35 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_36 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_37 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_38 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_39 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_40 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_41 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_42 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_43 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_44 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_45 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_46 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_47 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_48 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_49 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_50 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_51 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_52 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_53 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_54 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_55 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_56 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_57 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_58 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_59 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_60 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_61 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_62 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_63 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_64 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_65 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_66 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_67 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_68 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_69 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_70 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_71 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_72 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_73 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_74 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_75 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_76 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_77 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_78 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_79 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_80 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_81 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_82 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_83 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_84 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_85 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_86 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_87 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_88 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_89 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_90 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_91 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_93 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_94 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_95 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_96 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_97 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_98 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_100 | 0.0 | 1.0 | 0.0 |
| EDDOIEPM_101 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_102 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_104 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_105 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_106 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_107 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_108 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_109 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_110 | 1.0 | 0.0 | 1.0 |
| EDDOIEPM_111 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDDOIEPM_38 | 6693 | 36476 | False | Siphoviridae | VOG8647, VOG0189, VOG11024, VOG4813, VOG0198, VOG5616, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
| EDDOIEPM_39 | 7494 | 23583 | False | Siphoviridae | VOG4632, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG1347 |
| EDDOIEPM_39 | 25945 | 30004 | False | Unknown | VOG0535, VOG5046, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)