Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNFAFMEO_1 | 63949 | 67632 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| CNFAFMEO_19 | 39406 | 42732 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CNFAFMEO_69 | 483 | 1162 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CNFAFMEO_1 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_2 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_3 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_4 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_5 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_6 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_7 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_8 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_9 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_10 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_11 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_12 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_13 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_14 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_15 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_16 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_17 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_18 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_19 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_20 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_21 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_22 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_23 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_24 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_25 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_26 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_27 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_28 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_29 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_30 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_31 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_32 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_33 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_34 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_35 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_36 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_37 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_38 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_39 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_40 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_41 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_42 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_43 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_44 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_45 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_46 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_47 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_48 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_49 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_50 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_51 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_52 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_53 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_54 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_55 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_56 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_57 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_58 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_59 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_60 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_61 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_62 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_63 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_64 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_65 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_66 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_67 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_68 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_69 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_70 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_71 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_72 | 1.0 | 0.0 | 1.0 |
| CNFAFMEO_73 | 0.0 | 1.0 | 0.0 |
| CNFAFMEO_75 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CNFAFMEO_5 | 13777 | 33792 | True | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075, VOG2090, VOG8440, VOG5532, VOG0944, VOG3622, VOG3479, VOG4585, VOG0275, VOG4602 |
| CNFAFMEO_17 | 14060 | 33727 | False | Myoviridae | VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG4548, VOG0384 |
Phigaro v2.4.0 (Database: Jan. 2024 release)