Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCAJMPJC_10 | 65863 | 69546 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| PCAJMPJC_25 | 11192 | 14518 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCAJMPJC_1 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_2 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_3 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_4 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_5 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_6 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_7 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_8 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_9 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_10 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_11 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_12 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_13 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_14 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_15 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_16 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_17 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_18 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_19 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_20 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_21 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_22 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_23 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_24 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_25 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_26 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_27 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_28 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_29 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_30 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_31 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_32 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_33 | 1.0 | 0.0 | 1.0 |
| PCAJMPJC_34 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_35 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_36 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_37 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_38 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_39 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_40 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_41 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_42 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_43 | 1.0 | 0.0 | 1.0 |
| PCAJMPJC_44 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_45 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_46 | 1.0 | 0.0 | 1.0 |
| PCAJMPJC_47 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_48 | 1.0 | 0.0 | 1.0 |
| PCAJMPJC_49 | 1.0 | 0.0 | 1.0 |
| PCAJMPJC_50 | 1.0 | 0.0 | 1.0 |
| PCAJMPJC_51 | 1.0 | 0.0 | 1.0 |
| PCAJMPJC_52 | 0.0 | 1.0 | 0.0 |
| PCAJMPJC_53 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCAJMPJC_8 | 62695 | 82710 | True | Siphoviridae | VOG0275, VOG4602, VOG0275, VOG4585, VOG3479, VOG3622, VOG0944, VOG5532, VOG8440, VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| PCAJMPJC_15 | 30638 | 43907 | False | Myoviridae / Podoviridae | VOG8190, VOG0052, VOG0382, VOG5689 |
Phigaro v2.4.0 (Database: Jan. 2024 release)