Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IJNGIHEP_15 | 18192 | 21518 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
| IJNGIHEP_13 | 6757 | 10440 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IJNGIHEP_1 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_2 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_3 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_4 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_5 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_6 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_7 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_8 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_9 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_10 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_11 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_12 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_13 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_14 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_15 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_16 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_17 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_18 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_19 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_20 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_21 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_22 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_23 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_24 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_25 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_26 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_27 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_28 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_29 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_30 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_31 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_32 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_33 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_34 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_35 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_36 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_37 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_38 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_39 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_40 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_41 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_42 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_43 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_44 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_45 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_46 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_47 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_48 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_49 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_50 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_51 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_52 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_53 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_54 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_55 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_56 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_57 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_58 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_59 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_60 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_61 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_62 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_63 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_64 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_65 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_66 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_67 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_68 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_69 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_70 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_71 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_72 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_73 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_74 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_75 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_76 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_77 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_78 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_79 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_81 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_82 | 0.0 | 1.0 | 0.0 |
| IJNGIHEP_83 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_84 | 1.0 | 0.0 | 1.0 |
| IJNGIHEP_87 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IJNGIHEP_19 | 13534 | 28922 | False | Myoviridae / Podoviridae | VOG2090, VOG8190, VOG0052, VOG0382, VOG5689 |
| IJNGIHEP_30 | 5705 | 12012 | False | Siphoviridae | VOG11075, VOG0585, VOG3304, VOG0010, VOG4602, VOG5395 |
Phigaro v2.4.0 (Database: Jan. 2024 release)