Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBDJEKKF_8 | 51707 | 55390 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 103.46 | NC_008618.1 |
| HBDJEKKF_18 | 19672 | 22998 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
| HBDJEKKF_30 | 192 | 2111 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HBDJEKKF_30 | 192 | 2111 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBDJEKKF_30 | 195 | 2111 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
| HBDJEKKF_3 | 62966 | 63433 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | BLASTX | 100.00 | 95.12 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBDJEKKF_1 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_2 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_3 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_4 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_5 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_6 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_7 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_8 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_9 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_10 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_11 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_12 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_13 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_14 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_15 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_16 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_17 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_18 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_19 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_20 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_21 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_22 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_23 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_24 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_25 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_26 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_27 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_28 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_29 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_30 | 1.0 | 0.0 | 1.0 |
| HBDJEKKF_31 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_32 | 0.0 | 1.0 | 0.0 |
| HBDJEKKF_33 | 1.0 | 0.0 | 1.0 |
| HBDJEKKF_34 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HBDJEKKF_5 | 62569 | 86985 | False | Myoviridae | VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG4548, VOG0384, VOG2484, VOG0085 |
| HBDJEKKF_11 | 5822 | 11653 | False | Siphoviridae | VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)