Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DBDEDFDM_2 | 38380 | 42012 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 102.02 | NC_008618.1 |
| DBDEDFDM_33 | 14681 | 16600 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
| DBDEDFDM_25 | 8950 | 12276 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DBDEDFDM_33 | 14681 | 16600 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DBDEDFDM_33 | 14681 | 16597 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
| DBDEDFDM_2 | 152132 | 152599 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | BLASTX | 100.00 | 95.12 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DBDEDFDM_1 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_2 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_3 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_4 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_5 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_6 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_7 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_8 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_9 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_10 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_11 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_12 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_13 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_14 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_15 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_16 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_17 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_18 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_19 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_20 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_21 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_22 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_23 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_24 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_25 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_26 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_27 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_28 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_29 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_30 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_31 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_32 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_33 | 1.0 | 0.0 | 1.0 |
| DBDEDFDM_34 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_35 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_36 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_37 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_38 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_39 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_40 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_41 | 1.0 | 0.0 | 1.0 |
| DBDEDFDM_42 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_44 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_45 | 1.0 | 0.0 | 1.0 |
| DBDEDFDM_46 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_47 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_48 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_49 | 1.0 | 0.0 | 1.0 |
| DBDEDFDM_50 | 0.0 | 1.0 | 0.0 |
| DBDEDFDM_51 | 1.0 | 0.0 | 1.0 |
| DBDEDFDM_52 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DBDEDFDM_13 | 18977 | 36232 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075, VOG2090, VOG8440, VOG5532, VOG0944, VOG3622, VOG3479, VOG4585 |
Phigaro v2.4.0 (Database: Jan. 2024 release)