Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMFKJNMB_1 | 103025 | 106657 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 102.02 | NC_008618.1 |
| LMFKJNMB_25 | 19679 | 23005 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.55 | 100.09 | CP001840.1 |
| LMFKJNMB_41 | 192 | 2111 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LMFKJNMB_41 | 192 | 2111 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMFKJNMB_41 | 195 | 2111 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
| LMFKJNMB_18 | 7419 | 7886 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | BLASTX | 100.00 | 95.12 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMFKJNMB_1 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_2 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_3 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_4 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_5 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_6 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_7 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_8 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_9 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_10 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_11 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_12 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_13 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_14 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_15 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_16 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_17 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_18 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_19 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_20 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_21 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_22 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_23 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_24 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_25 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_26 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_27 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_28 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_29 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_30 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_31 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_32 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_33 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_34 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_35 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_36 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_37 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_38 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_39 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_40 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_41 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_42 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_43 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_44 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_45 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_46 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_47 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_48 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_49 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_50 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_51 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_52 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_53 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_54 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_55 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_56 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_57 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_58 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_59 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_60 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_62 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_63 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_64 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_65 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_66 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_67 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_68 | 1.0 | 0.0 | 1.0 |
| LMFKJNMB_69 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_70 | 1.0 | 0.0 | 1.0 |
| LMFKJNMB_71 | 0.0 | 1.0 | 0.0 |
| LMFKJNMB_72 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMFKJNMB_8 | 32939 | 57336 | False | Myoviridae | VOG0677, VOG0085, VOG2484, VOG0384, VOG4548, VOG5689, VOG0382, VOG0052, VOG8190 |
Phigaro v2.4.0 (Database: Jan. 2024 release)