Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HPEIFLPB_1 | 268464 | 272147 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| HPEIFLPB_5 | 29664 | 32990 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.82 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPEIFLPB_1 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_2 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_3 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_4 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_5 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_6 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_7 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_8 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_9 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_10 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_11 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_12 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_13 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_14 | 1.0 | 0.0 | 1.0 |
| HPEIFLPB_15 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_17 | 0.0 | 1.0 | 0.0 |
| HPEIFLPB_18 | 1.0 | 0.0 | 1.0 |
| HPEIFLPB_19 | 1.0 | 0.0 | 1.0 |
| HPEIFLPB_20 | 1.0 | 0.0 | 1.0 |
| HPEIFLPB_21 | 1.0 | 0.0 | 1.0 |
| HPEIFLPB_22 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPEIFLPB_3 | 182264 | 192806 | False | Siphoviridae | VOG4599, VOG4605, VOG5793, VOG5601, VOG1581, VOG0880 |
| HPEIFLPB_4 | 82313 | 89989 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075 |
| HPEIFLPB_6 | 79740 | 90061 | False | Myoviridae / Podoviridae | VOG8190, VOG0052, VOG0382, VOG5689 |
| HPEIFLPB_11 | 18250 | 23245 | False | Siphoviridae | VOG2842, VOG4571, VOG0275 |
| HPEIFLPB_11 | 35419 | 37178 | False | Siphoviridae | VOG5782, VOG0943, VOG2538 |
Phigaro v2.4.0 (Database: Jan. 2024 release)