Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MNHOIODH_1 | 395683 | 399315 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| MNHOIODH_2 | 35541 | 38867 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
| MNHOIODH_9 | 22 | 882 | TEM-181 | ARO:3001044 | TEM-181 | 100.00 | 100.00 | AM743197.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MNHOIODH_9 | 22 | 882 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 99.88 | 100.00 | AY458016 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MNHOIODH_9 | 25 | 882 | blaTEM-181 | class A beta-lactamase TEM-181 | ALLELEX | 100.00 | 100.00 | WP_000027060.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MNHOIODH_15 | 1275 | 820 | tnpA | 4.71e-104 | regulatory RNA/ transposase for IS200 | 95.39 | 100.00 | AKH06467 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MNHOIODH_12 | 509 | 741 | Col(BS512) | 233 / 233 | 100.00 | NC010656 |
| MNHOIODH_16 | 60 | 321 | Col(MG828) | 262 / 262 | 91.60 | NC008486 |
| MNHOIODH_13 | 12 | 142 | ColRNAI | 131 / 130 | 87.79 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MNHOIODH_1 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_2 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_3 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_4 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_5 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_6 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_7 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_9 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_10 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_11 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_12 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_13 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_14 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_15 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_16 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_17 | 0.0 | 1.0 | 0.0 |
| MNHOIODH_18 | 1.0 | 0.0 | 1.0 |
| MNHOIODH_19 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MNHOIODH_1 | 749007 | 765083 | False | Unknown | VOG6495, VOG10195, VOG0275, VOG4606, VOG0822, VOG2090, VOG4548, VOG0822 |
| MNHOIODH_3 | 350514 | 370583 | True | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075, VOG2090, VOG8440, VOG5532, VOG0944, VOG3622, VOG3479, VOG4585, VOG0275, VOG4602 |
| MNHOIODH_4 | 134683 | 141108 | False | Siphoviridae | VOG1031, VOG5532, VOG1246, VOG7140, VOG0189 |
| MNHOIODH_5 | 13208 | 35425 | False | Myoviridae | VOG2484, VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)