Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDHONEDC_105 | 64489 | 65193 | WalR | 6.81e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CDHONEDC_75 | 22906 | 23103 | CspR | 4.16e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDHONEDC_1 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_2 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_3 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_4 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_5 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_6 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_7 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_8 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_9 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_10 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_11 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_12 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_13 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_15 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_16 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_17 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_18 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_19 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_20 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_21 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_22 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_23 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_24 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_25 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_26 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_27 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_28 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_29 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_30 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_31 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_33 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_44 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_55 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_56 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_57 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_58 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_59 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_60 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_61 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_62 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_63 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_64 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_65 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_66 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_67 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_68 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_69 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_70 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_71 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_72 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_73 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_74 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_75 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_76 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_77 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_78 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_79 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_80 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_81 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_82 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_83 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_84 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_85 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_86 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_87 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_88 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_89 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_90 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_91 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_92 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_93 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_94 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_95 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_96 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_97 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_98 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_99 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_100 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_101 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_102 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_103 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_104 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_105 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_106 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_107 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_108 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_109 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_110 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_111 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_112 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_113 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_114 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_115 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_116 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_117 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_118 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_119 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_120 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_121 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_122 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_123 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_124 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_125 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_126 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_127 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_128 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_129 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_130 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_131 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_132 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_133 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_134 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_135 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_136 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_137 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_138 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_139 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_140 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_141 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_142 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_143 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_144 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_145 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_147 | 0.0 | 1.0 | 0.0 |
| CDHONEDC_148 | 1.0 | 0.0 | 1.0 |
| CDHONEDC_149 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDHONEDC_69 | 6756 | 36149 | False | Siphoviridae | VOG4918, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4705, VOG0701, VOG9763, VOG5601, VOG5587, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG1183, VOG5616, VOG0692, VOG0691, VOG4544, VOG3699, VOG4570, VOG0198, VOG2338, VOG0044, VOG6386, VOG3643, VOG4994, VOG0152 |
Phigaro v2.4.0 (Database: Jan. 2024 release)