Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKLFBENN_7 | 5203 | 8763 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
| PKLFBENN_10 | 1276 | 1770 | lnuC | ARO:3002837 | lnuC | 97.56 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKLFBENN_10 | 1276 | 1770 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKLFBENN_10 | 1276 | 1767 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 97.56 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKLFBENN_1 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_2 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_3 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_5 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_6 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_7 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_8 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_9 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_10 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_11 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_12 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_13 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_14 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_15 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_16 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_17 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_18 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_19 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_20 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_21 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_22 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_23 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_24 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_25 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_26 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_27 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_28 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_29 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_32 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_33 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_34 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_36 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_38 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_39 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_40 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_42 | 1.0 | 0.0 | 1.0 |
| PKLFBENN_44 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_45 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_47 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_48 | 1.0 | 0.0 | 1.0 |
| PKLFBENN_49 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_50 | 1.0 | 0.0 | 1.0 |
| PKLFBENN_51 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_53 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_54 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_55 | 1.0 | 0.0 | 1.0 |
| PKLFBENN_56 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_57 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_58 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_60 | 0.0 | 1.0 | 0.0 |
| PKLFBENN_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)