Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DHNEAPNA_27 | 114916 | 115247 | aac(6')-Ic | Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin | 93.45 | 74.15 | M94066 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DHNEAPNA_30 | 59943 | 59242 | WalR | 2.95e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
| DHNEAPNA_27 | 125398 | 125132 | FlhD | 1.81e-42 | flagellar transcriptional regulator FlhD | 96.63 | 74.79 | AAC27633 |
| DHNEAPNA_27 | 125398 | 125132 | flhD | 4.47e-34 | virulence factor | 83.15 | 76.72 | AGB83016 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DHNEAPNA_27 | 35965 | 36953 | rep38 | 989 / 1104 | 97.37 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DHNEAPNA_1 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_2 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_3 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_4 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_5 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_6 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_7 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_8 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_9 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_10 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_11 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_12 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_13 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_14 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_15 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_16 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_17 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_18 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_19 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_20 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_21 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_22 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_23 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_25 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_26 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_27 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_28 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_29 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_30 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_31 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_32 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_33 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_34 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_35 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_36 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_37 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_38 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_39 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_40 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_41 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_42 | 1.0 | 0.0 | 1.0 |
| DHNEAPNA_43 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_44 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_45 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_46 | 0.0 | 1.0 | 0.0 |
| DHNEAPNA_47 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DHNEAPNA_46 | 12491 | 36910 | False | Myoviridae | VOG0052, VOG7407, VOG0720, VOG4564, VOG3434, VOG1887, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6307, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
Phigaro v2.4.0 (Database: Jan. 2024 release)