Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GLJKEAIG_105 | 2925 | 3629 | WalR | 6.96e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GLJKEAIG_39 | 45364 | 45558 | CspR | 6.90e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GLJKEAIG_39 | 45364 | 45561 | CspA | 1.06e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GLJKEAIG_57 | 5870 | 6772 | rep38 | 903 / 903 | 99.45 | CP005943 |
| GLJKEAIG_58 | 267 | 1196 | rep28 | 930 / 930 | 98.49 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLJKEAIG_1 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_2 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_13 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_20 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_21 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_22 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_23 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_24 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_25 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_26 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_27 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_28 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_29 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_30 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_31 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_32 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_33 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_34 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_35 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_36 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_37 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_38 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_39 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_40 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_41 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_42 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_43 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_44 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_45 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_46 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_47 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_48 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_49 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_50 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_51 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_52 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_53 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_54 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_55 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_56 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_57 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_58 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_59 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_60 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_61 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_62 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_63 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_64 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_65 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_66 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_67 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_68 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_69 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_70 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_71 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_72 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_73 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_74 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_75 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_76 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_77 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_78 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_79 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_80 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_81 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_82 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_83 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_84 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_85 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_86 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_87 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_88 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_89 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_91 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_92 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_93 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_94 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_95 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_96 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_97 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_98 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_99 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_100 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_101 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_102 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_103 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_104 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_105 | 0.0 | 1.0 | 0.0 |
| GLJKEAIG_106 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_108 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_109 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_110 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_111 | 1.0 | 0.0 | 1.0 |
| GLJKEAIG_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GLJKEAIG_1 | 229917 | 248699 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4553, VOG0204, VOG0198, VOG0275, VOG4694, VOG0083, VOG7508 |
| GLJKEAIG_23 | 1989 | 19785 | False | Siphoviridae | VOG4573, VOG7853, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599, VOG10957 |
| GLJKEAIG_42 | 3745 | 21236 | False | Siphoviridae | VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701 |
Phigaro v2.4.0 (Database: Jan. 2024 release)