Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFKECKJI_1 | 1274654 | 1275358 | WalR | 2.20e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GFKECKJI_2 | 91787 | 92848 | repUS74 | 1063 / 1062 | 93.60 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFKECKJI_1 | 0.0 | 1.0 | 0.0 |
| GFKECKJI_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GFKECKJI_1 | 1044 | 5605 | False | Siphoviridae | VOG11003, VOG8987, VOG1638, VOG6238, VOG4566, VOG0186, VOG1309 |
| GFKECKJI_1 | 269990 | 300140 | False | Siphoviridae | VOG4918, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG4673, VOG0744, VOG4693, VOG5562, VOG5998, VOG0189, VOG4566, VOG11003, VOG1309, VOG4600, VOG10867, VOG0181, VOG4552, VOG5353 |
| GFKECKJI_1 | 679779 | 691905 | True | Siphoviridae | VOG5088, VOG5088, VOG4549, VOG4570, VOG4570, VOG5088, VOG0198, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799 |
| GFKECKJI_1 | 2110289 | 2142598 | False | Siphoviridae | VOG1309, VOG0186, VOG4855, VOG0226, VOG0296, VOG11003, VOG9860, VOG0536, VOG9741, VOG2820, VOG3643, VOG0044, VOG0198, VOG6579, VOG4570, VOG0796, VOG10227, VOG0720, VOG0720, VOG4564, VOG5616, VOG1183, VOG4555, VOG0694, VOG1322, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856, VOG0861, VOG7017, VOG0602 |
| GFKECKJI_1 | 2239223 | 2277452 | False | Siphoviridae | VOG9667, VOG3622, VOG4552, VOG0181, VOG10867, VOG3642, VOG4799, VOG0025, VOG7735, VOG4693, VOG6238, VOG0195, VOG4237, VOG0152, VOG3643, VOG1298, VOG0044, VOG2338, VOG0198, VOG4570, VOG5821, VOG4549, VOG9033, VOG6947, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918 |
| GFKECKJI_1 | 2593540 | 2600533 | False | Unknown | VOG5088, VOG10016, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495, VOG0275 |
| GFKECKJI_1 | 2979619 | 3006244 | False | Siphoviridae | VOG4649, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG5616, VOG4564, VOG0720, VOG0796, VOG4549, VOG4570, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)