Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DHDEBFGN_280 | 67459 | 67656 | CspA | 1.45e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| DHDEBFGN_280 | 67459 | 67653 | CspR | 6.29e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
| DHDEBFGN_36 | 424 | 317 | yshB | 9.62e-10 | conserved sORF | 91.67 | 100.00 | CCG27797 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DHDEBFGN_1 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_2 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_11 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_20 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_27 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_37 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_48 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_59 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_70 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_81 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_92 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_103 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_104 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_115 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_126 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_137 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_148 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_159 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_170 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_181 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_192 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_203 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_214 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_215 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_226 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_228 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_229 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_230 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_231 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_232 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_233 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_234 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_235 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_236 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_237 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_238 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_239 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_240 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_241 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_242 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_243 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_244 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_245 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_246 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_247 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_248 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_249 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_250 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_251 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_252 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_253 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_254 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_255 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_256 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_257 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_258 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_259 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_260 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_261 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_262 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_263 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_264 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_265 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_266 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_267 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_268 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_269 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_270 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_271 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_272 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_273 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_274 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_275 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_276 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_277 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_278 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_279 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_280 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_281 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_282 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_283 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_284 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_285 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_286 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_287 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_288 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_289 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_290 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_291 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_292 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_293 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_295 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_296 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_297 | 0.0 | 1.0 | 0.0 |
| DHDEBFGN_298 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_300 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_301 | 1.0 | 0.0 | 1.0 |
| DHDEBFGN_302 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DHDEBFGN_259 | 26216 | 60227 | False | Siphoviridae | VOG2228, VOG10904, VOG0535, VOG0322, VOG0226, VOG4566, VOG0189, VOG8685, VOG4693, VOG4559, VOG0198, VOG4841, VOG4581, VOG4544, VOG4556, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223, VOG8917 |
Phigaro v2.4.0 (Database: Jan. 2024 release)