Probiotic potential risk score


ARGs VFs PGs PPRS
0000.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
JLNEADAI_11.00.01.0
JLNEADAI_20.01.00.0
JLNEADAI_31.00.01.0
JLNEADAI_41.00.01.0
JLNEADAI_51.00.01.0
JLNEADAI_60.01.00.0
JLNEADAI_70.01.00.0
JLNEADAI_81.00.01.0
JLNEADAI_90.01.00.0
JLNEADAI_100.01.00.0
JLNEADAI_110.01.00.0
JLNEADAI_121.00.01.0
JLNEADAI_131.00.01.0
JLNEADAI_141.00.01.0
JLNEADAI_151.00.01.0
JLNEADAI_161.00.01.0
JLNEADAI_171.00.01.0
JLNEADAI_181.00.01.0
JLNEADAI_190.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
JLNEADAI_10121455148161FalseSiphoviridaeVOG0198, VOG4841, VOG4581, VOG3349, VOG9438, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545, VOG4633, VOG4659, VOG7017, VOG0083, VOG4687, VOG6540, VOG9945, VOG4705, VOG0861
JLNEADAI_10424218452172FalseMyoviridaeVOG9945, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG1915, VOG4918, VOG5027, VOG1912, VOG7407, VOG0796, VOG2545, VOG0376
JLNEADAI_10544334571188FalseSiphoviridaeVOG6540, VOG1594, VOG8355, VOG4659, VOG4633, VOG8263, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG0376, VOG2545, VOG4581, VOG4841, VOG0198, VOG6005, VOG0327, VOG3307
JLNEADAI_10572945589655TrueSiphoviridaeVOG4606, VOG6545, VOG4548, VOG0322, VOG4611, VOG9708, VOG2228, VOG4552, VOG8520, VOG8520, VOG4602, VOG6965, VOG0371, VOG0275, VOG4010, VOG2352
JLNEADAI_131499146572FalseMyoviridaeVOG1026, VOG0198, VOG0686, VOG0796, VOG7407, VOG1912, VOG5027, VOG4865, VOG1915, VOG6932, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6307, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4620, VOG5913, VOG4397

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements