Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CICMIJOE_79 | 22217 | 21513 | WalR | 1.08e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CICMIJOE_51 | 15256 | 15453 | CspR | 4.98e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CICMIJOE_11 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_22 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_32 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_39 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_40 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_41 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_42 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_43 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_44 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_45 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_46 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_47 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_48 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_49 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_50 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_51 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_52 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_53 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_54 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_55 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_56 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_57 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_58 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_59 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_60 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_61 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_62 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_63 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_64 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_65 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_66 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_67 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_68 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_69 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_70 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_71 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_72 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_73 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_74 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_75 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_76 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_77 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_78 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_79 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_80 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_81 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_82 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_83 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_84 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_85 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_86 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_87 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_89 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_90 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_91 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_92 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_93 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_94 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_95 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_96 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_97 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_98 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_99 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_100 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_101 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_102 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_103 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_104 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_105 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_106 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_107 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_108 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_109 | 1.0 | 0.0 | 1.0 |
| CICMIJOE_112 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_123 | 0.0 | 1.0 | 0.0 |
| CICMIJOE_134 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CICMIJOE_41 | 1504 | 13234 | False | Unknown | VOG4549, VOG4570, VOG0198, VOG0044, VOG7441, VOG3643, VOG0152, VOG4237, VOG4567, VOG9741, VOG0536, VOG9860, VOG0226, VOG4566, VOG0685 |
| CICMIJOE_50 | 3996 | 33786 | False | Siphoviridae | VOG0275, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG4564, VOG0720, VOG4544, VOG0796, VOG4570, VOG0198, VOG1563, VOG0044, VOG7441, VOG3643, VOG2820 |
| CICMIJOE_55 | 17613 | 21842 | False | Siphoviridae | VOG3685, VOG7656, VOG3304, VOG0862, VOG5353, VOG4552 |
| CICMIJOE_57 | 3082 | 19171 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG4545, VOG4633, VOG4763, VOG3498, VOG0648, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)