Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HPJIGCHD_1 | 37769 | 38473 | WalR | 3.80e-113 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HPJIGCHD_15 | 1 | 828 | rep28 | 828 / 930 | 97.22 | CP003162 |
| HPJIGCHD_6 | 1 | 957 | repUS64 | 958 / 954 | 92.69 | JN601038 |
| HPJIGCHD_7 | 186 | 684 | repUS54 | 500 / 690 | 84.80 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPJIGCHD_1 | 0.0 | 1.0 | 0.0 |
| HPJIGCHD_2 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_3 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_4 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_5 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_6 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_7 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_8 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_9 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_10 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_11 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_12 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_13 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_14 | 1.0 | 0.0 | 1.0 |
| HPJIGCHD_15 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPJIGCHD_1 | 978164 | 1004051 | False | Siphoviridae | VOG0822, VOG0044, VOG3643, VOG0198, VOG5616, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG10593, VOG8294, VOG1637, VOG0054 |
| HPJIGCHD_1 | 1911968 | 1940129 | False | Siphoviridae | VOG0054, VOG0753, VOG4918, VOG4783, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG5088, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198 |
| HPJIGCHD_1 | 2093748 | 2116536 | False | Siphoviridae | VOG9998, VOG0254, VOG10608, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581 |
| HPJIGCHD_1 | 2603046 | 2638233 | True | Siphoviridae | VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG4619, VOG0801, VOG6163, VOG0541, VOG7168, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154, VOG3685, VOG5088, VOG5088, VOG4673, VOG3643, VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)