Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KMGNIPKL_30 | 278923 | 279627 | WalR | 2.74e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| KMGNIPKL_11 | 10134 | 10331 | CspR | 9.50e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KMGNIPKL_20 | 1 | 1013 | repUS74 | 1015 / 1062 | 91.82 | CP000424 |
| KMGNIPKL_44 | 4318 | 5253 | rep28 | 937 / 936 | 81.96 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMGNIPKL_9 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_10 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_11 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_12 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_13 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_14 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_15 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_16 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_17 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_18 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_19 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_20 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_21 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_22 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_23 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_24 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_25 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_26 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_27 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_28 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_29 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_30 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_31 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_32 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_33 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_34 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_35 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_36 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_37 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_38 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_39 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_40 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_41 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_42 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_43 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_44 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_45 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_46 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_47 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_48 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_49 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_50 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_51 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_52 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_53 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_54 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_55 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_58 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_59 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_60 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_61 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_62 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_63 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_64 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_66 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_67 | 1.0 | 0.0 | 1.0 |
| KMGNIPKL_74 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_85 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_96 | 0.0 | 1.0 | 0.0 |
| KMGNIPKL_107 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KMGNIPKL_11 | 32533 | 64371 | False | Siphoviridae | VOG1309, VOG0186, VOG4855, VOG0226, VOG11003, VOG9860, VOG0536, VOG4567, VOG0198, VOG9153, VOG4570, VOG3699, VOG4544, VOG10227, VOG0691, VOG0692, VOG5616, VOG1183, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG10044, VOG0701, VOG4545, VOG4605, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017 |
| KMGNIPKL_96 | 57167 | 65403 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)