Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AJGPDEKB_33 | 313145 | 312441 | WalR | 2.43e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| AJGPDEKB_5 | 49791 | 49594 | CspR | 1.06e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AJGPDEKB_1 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_2 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_3 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_4 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_5 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_6 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_7 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_8 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_9 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_10 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_11 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_12 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_13 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_14 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_15 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_16 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_17 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_18 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_19 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_20 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_21 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_22 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_23 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_24 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_25 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_26 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_27 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_28 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_29 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_30 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_32 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_33 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_34 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_35 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_36 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_37 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_38 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_39 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_40 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_41 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_42 | 1.0 | 0.0 | 1.0 |
| AJGPDEKB_44 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_55 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_66 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_77 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_83 | 0.0 | 1.0 | 0.0 |
| AJGPDEKB_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AJGPDEKB_5 | 3 | 26958 | False | Siphoviridae | VOG4605, VOG4705, VOG0701, VOG10044, VOG5587, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG5616, VOG4570, VOG0376, VOG2545, VOG0198, VOG8974, VOG0044, VOG3643, VOG0152, VOG0536, VOG9860, VOG5413, VOG0189, VOG5046, VOG0226, VOG0283 |
| AJGPDEKB_6 | 3 | 31676 | False | Siphoviridae | VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG1345, VOG4549, VOG4570, VOG6422, VOG0198, VOG0044, VOG0044, VOG3643, VOG3643, VOG0152, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG0189, VOG4566, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG11003, VOG6495 |
| AJGPDEKB_11 | 327470 | 357385 | False | Siphoviridae | VOG4551, VOG2820, VOG0275, VOG9667, VOG0376, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0195 |
Phigaro v2.4.0 (Database: Jan. 2024 release)