Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGABGOBG_1 | 27208 | 27011 | CspA | 1.06e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| NGABGOBG_1 | 27208 | 27014 | CspR | 1.92e-28 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGABGOBG_1 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_2 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_3 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_4 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_5 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_6 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_7 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_8 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_9 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_10 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_11 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_12 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_13 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_14 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_15 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_16 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_17 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_18 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_19 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_20 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_21 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_22 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_23 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_24 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_25 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_26 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_27 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_28 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_29 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_30 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_31 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_32 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_33 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_34 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_35 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_36 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_37 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_38 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_39 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_40 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_41 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_42 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_43 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_44 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_45 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_46 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_47 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_48 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_49 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_50 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_51 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_52 | 1.0 | 0.0 | 1.0 |
| NGABGOBG_53 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_54 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_55 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_56 | 0.0 | 1.0 | 0.0 |
| NGABGOBG_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGABGOBG_11 | 166432 | 182251 | False | Myoviridae | VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
| NGABGOBG_53 | 62831 | 96265 | False | Siphoviridae | VOG0862, VOG9667, VOG7581, VOG4552, VOG2228, VOG1309, VOG0186, VOG0226, VOG4156, VOG0189, VOG8685, VOG1305, VOG4559, VOG0198, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)