Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PHOOOPIC_1 | 2762314 | 2761610 | WalR | 2.11e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PHOOOPIC_7 | 9 | 1043 | rep38 | 1044 / 1104 | 81.32 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHOOOPIC_1 | 0.0 | 1.0 | 0.0 |
| PHOOOPIC_2 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_3 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_4 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_5 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_6 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_7 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_8 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_9 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_10 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_11 | 1.0 | 0.0 | 1.0 |
| PHOOOPIC_12 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PHOOOPIC_1 | 563781 | 574101 | False | Siphoviridae | VOG0181, VOG10867, VOG4799, VOG0189, VOG0982, VOG5280, VOG5317, VOG3307, VOG0198, VOG5088, VOG4570, VOG4549 |
| PHOOOPIC_1 | 1939474 | 1979340 | False | Siphoviridae | VOG7641, VOG7642, VOG9747, VOG4649, VOG0602, VOG7017, VOG0861, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG4549, VOG4570, VOG4694, VOG0198, VOG3643, VOG0152, VOG4567, VOG0536, VOG9860, VOG6237, VOG0189, VOG0226, VOG0322, VOG0535, VOG6495, VOG6495 |
| PHOOOPIC_1 | 2832773 | 2843958 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| PHOOOPIC_10 | 18178 | 25903 | True | Myoviridae / Siphoviridae | VOG3405, VOG5904, VOG0944, VOG4632, VOG0985, VOG5532, VOG8387 |
Phigaro v2.4.0 (Database: Jan. 2024 release)