Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EMADLOFM_12 | 12352 | 13056 | WalR | 1.36e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| EMADLOFM_1 | 41058 | 41255 | CspR | 1.76e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EMADLOFM_1 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_2 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_3 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_4 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_5 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_6 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_7 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_8 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_9 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_10 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_11 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_12 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_13 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_14 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_15 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_16 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_17 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_18 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_19 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_20 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_21 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_22 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_23 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_24 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_25 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_26 | 0.0 | 1.0 | 0.0 |
| EMADLOFM_27 | 1.0 | 0.0 | 1.0 |
| EMADLOFM_30 | 1.0 | 0.0 | 1.0 |
| EMADLOFM_31 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EMADLOFM_2 | 39885 | 50830 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
| EMADLOFM_4 | 4071 | 44689 | False | Siphoviridae | VOG6914, VOG7581, VOG6463, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG0195, VOG0275, VOG4643, VOG2820, VOG3643, VOG9281, VOG2338, VOG0198, VOG4549, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG10303, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918, VOG3412 |
Phigaro v2.4.0 (Database: Jan. 2024 release)