Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DJJPFHAD_79 | 449 | 252 | CspA | 4.68e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| DJJPFHAD_79 | 449 | 255 | CspR | 2.03e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DJJPFHAD_89 | 1707 | 2249 | rep38 | 543 / 903 | 85.82 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DJJPFHAD_1 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_2 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_3 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_4 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_11 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_22 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_33 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_44 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_52 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_53 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_54 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_55 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_56 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_57 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_58 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_59 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_60 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_61 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_62 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_63 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_64 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_65 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_66 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_67 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_68 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_69 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_70 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_71 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_72 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_73 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_74 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_75 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_76 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_77 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_78 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_79 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_80 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_81 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_82 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_83 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_84 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_85 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_86 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_87 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_88 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_89 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_90 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_91 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_92 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_93 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_94 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_95 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_96 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_97 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_98 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_99 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_100 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_101 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_102 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_103 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_104 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_105 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_106 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_107 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_108 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_109 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_110 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_111 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_112 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_113 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_114 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_115 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_116 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_117 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_118 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_119 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_120 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_121 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_122 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_123 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_124 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_125 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_126 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_127 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_128 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_129 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_130 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_131 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_133 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_134 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_135 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_136 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_137 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_138 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_139 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_140 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_141 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_142 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_144 | 0.0 | 1.0 | 0.0 |
| DJJPFHAD_145 | 1.0 | 0.0 | 1.0 |
| DJJPFHAD_146 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DJJPFHAD_11 | 9760 | 42729 | False | Siphoviridae | VOG0703, VOG1637, VOG4687, VOG11074, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG4586, VOG0207, VOG4317, VOG0205, VOG0204, VOG4568, VOG4556, VOG10142, VOG1886, VOG4581, VOG4841, VOG3691, VOG0198, VOG4799, VOG0226, VOG0186, VOG1309, VOG3929, VOG2228, VOG4552, VOG3622, VOG9667, VOG0862 |
| DJJPFHAD_81 | 478 | 18313 | False | Siphoviridae | VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047 |
Phigaro v2.4.0 (Database: Jan. 2024 release)