Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMNALPHB_11 | 142342 | 143046 | WalR | 1.88e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CMNALPHB_33 | 155008 | 154811 | CspR | 2.41e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMNALPHB_38 | 8850 | 9908 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMNALPHB_1 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_2 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_3 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_4 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_5 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_6 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_7 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_8 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_9 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_10 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_11 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_12 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_13 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_14 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_15 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_16 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_17 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_18 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_19 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_20 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_21 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_22 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_23 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_24 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_25 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_26 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_27 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_28 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_29 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_30 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_31 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_32 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_33 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_34 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_35 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_36 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_37 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_38 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_39 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_40 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_41 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_42 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_43 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_44 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_45 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_46 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_48 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_49 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_50 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_51 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_52 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_53 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_54 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_55 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_56 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_57 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_58 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_59 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_60 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_61 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_62 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_63 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_64 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_65 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_66 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_67 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_68 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_69 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_70 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_72 | 1.0 | 0.0 | 1.0 |
| CMNALPHB_77 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_88 | 0.0 | 1.0 | 0.0 |
| CMNALPHB_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMNALPHB_22 | 54817 | 61365 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
| CMNALPHB_33 | 97205 | 123905 | False | Siphoviridae | VOG4605, VOG4918, VOG0703, VOG1637, VOG4705, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG3307 |
| CMNALPHB_33 | 125240 | 135309 | False | Unknown | VOG6623, VOG0189, VOG4566, VOG0186, VOG1309, VOG8241, VOG7236, VOG6495, VOG11003, VOG11003, VOG6179, VOG4965, VOG1333, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)