Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPDKOHCO_1 | 747371 | 748075 | WalR | 2.24e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CPDKOHCO_2 | 26300 | 27361 | repUS74 | 1062 / 1062 | 99.62 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPDKOHCO_1 | 0.0 | 1.0 | 0.0 |
| CPDKOHCO_2 | 1.0 | 0.0 | 1.0 |
| CPDKOHCO_3 | 1.0 | 0.0 | 1.0 |
| CPDKOHCO_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPDKOHCO_1 | 86325 | 90057 | False | Unknown | VOG5532, VOG4549, VOG4570, VOG4570 |
| CPDKOHCO_1 | 1719399 | 1755986 | False | Siphoviridae | VOG0862, VOG8520, VOG5353, VOG7236, VOG10397, VOG0707, VOG0181, VOG10867, VOG3642, VOG4799, VOG0025, VOG7735, VOG4813, VOG9759, VOG0198, VOG4570, VOG10904, VOG4549, VOG9303, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918, VOG3551 |
| CPDKOHCO_1 | 2476944 | 2515470 | False | Siphoviridae | VOG4605, VOG0249, VOG4649, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0701, VOG9763, VOG5601, VOG5587, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG1183, VOG5616, VOG0692, VOG0691, VOG4544, VOG0796, VOG4570, VOG0198, VOG0044, VOG1183, VOG3643, VOG2820, VOG4643, VOG0275, VOG0195, VOG4567, VOG0536, VOG9860, VOG7018, VOG0189, VOG4566, VOG0186, VOG1309, VOG8241 |
| CPDKOHCO_1 | 2610951 | 2618978 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)