Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| POMMNBOO_2 | 2008202 | 2007498 | WalR | 2.04e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| POMMNBOO_1 | 1.0 | 0.0 | 1.0 |
| POMMNBOO_2 | 0.0 | 1.0 | 0.0 |
| POMMNBOO_3 | 1.0 | 0.0 | 1.0 |
| POMMNBOO_4 | 1.0 | 0.0 | 1.0 |
| POMMNBOO_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| POMMNBOO_2 | 34204 | 71005 | False | Siphoviridae | VOG3622, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG9741, VOG0152, VOG6965, VOG3643, VOG0044, VOG1563, VOG0198, VOG4570, VOG10904, VOG4549, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5601, VOG5852, VOG6163, VOG4605, VOG4599, VOG1637, VOG0703 |
| POMMNBOO_2 | 258889 | 268391 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG1886, VOG4556, VOG4568 |
| POMMNBOO_2 | 741546 | 767738 | True | Siphoviridae | VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG8387, VOG0944, VOG0944, VOG5088, VOG6965, VOG4548, VOG4571, VOG4643, VOG5088, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0195 |
| POMMNBOO_2 | 850858 | 884931 | True | Siphoviridae | VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG6947, VOG4549, VOG4570, VOG5088, VOG4643, VOG5088, VOG0198, VOG2338, VOG5733, VOG9671, VOG3643, VOG0152, VOG9741, VOG4693, VOG6623, VOG7018, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181 |
| POMMNBOO_2 | 1512797 | 1554189 | False | Siphoviridae | VOG6083, VOG9373, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1322, VOG0694, VOG0694, VOG4555, VOG1183, VOG4564, VOG0720, VOG10227, VOG3699, VOG4570, VOG9153, VOG0198, VOG1563, VOG3307, VOG3643, VOG2820, VOG9741, VOG0536, VOG7018, VOG0189, VOG4566, VOG0186, VOG1309, VOG2338 |
Phigaro v2.4.0 (Database: Jan. 2024 release)