Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JMPCPLCC_5 | 1 | 936 | rep28 | 937 / 936 | 81.96 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JMPCPLCC_1 | 0.0 | 1.0 | 0.0 |
| JMPCPLCC_2 | 1.0 | 0.0 | 1.0 |
| JMPCPLCC_3 | 1.0 | 0.0 | 1.0 |
| JMPCPLCC_4 | 1.0 | 0.0 | 1.0 |
| JMPCPLCC_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JMPCPLCC_1 | 793899 | 809882 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908, VOG0480, VOG8990 |
| JMPCPLCC_1 | 945064 | 959559 | False | Siphoviridae | VOG4549, VOG10391, VOG0275, VOG8483, VOG0862, VOG6495, VOG10059, VOG6450, VOG0650, VOG11003, VOG0685, VOG0322, VOG6545, VOG4799, VOG0025 |
| JMPCPLCC_1 | 966472 | 993503 | False | Myoviridae | VOG9295, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691, VOG4845 |
| JMPCPLCC_1 | 1353927 | 1378233 | False | Myoviridae | VOG3298, VOG3298, VOG1837, VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG4910, VOG4699, VOG1352, VOG1883, VOG1353, VOG5795, VOG1329, VOG4564, VOG0720, VOG8453, VOG10227 |
| JMPCPLCC_1 | 1384273 | 1386622 | False | Unknown | VOG7236 |
| JMPCPLCC_1 | 1443079 | 1468914 | False | Siphoviridae | VOG4705, VOG6540, VOG10972, VOG4599, VOG4605, VOG8263, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG1886, VOG4581, VOG4841, VOG4673 |
| JMPCPLCC_1 | 1470901 | 1474546 | False | Unknown | VOG0025, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)