Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AALCGNDC_1 | 2020132 | 2023695 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.82 | 100.08 | NC_008618.1 |
| AALCGNDC_1 | 886147 | 887001 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
| AALCGNDC_1 | 47808 | 48662 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AALCGNDC_1 | 47808 | 48570 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AALCGNDC_1 | 47808 | 48659 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
| AALCGNDC_1 | 886147 | 886998 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AALCGNDC_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AALCGNDC_1 | 356940 | 367174 | False | Siphoviridae | VOG9570, VOG9569, VOG5793, VOG5588, VOG5589, VOG5587, VOG4568, VOG4556 |
| AALCGNDC_1 | 1468477 | 1473345 | True | Myoviridae / Siphoviridae | VOG0944, VOG0945, VOG0944, VOG5473, VOG5470, VOG5532 |
| AALCGNDC_1 | 1652136 | 1676484 | False | Siphoviridae | VOG4582, VOG4545, VOG4599, VOG4599, VOG5372, VOG10223, VOG10348, VOG9502, VOG0602, VOG5088, VOG0189, VOG5088, VOG4694, VOG5482 |
| AALCGNDC_1 | 1723489 | 1733947 | True | Siphoviridae | VOG0945, VOG0944, VOG0275, VOG2545, VOG1561, VOG0733, VOG4602, VOG0943 |
| AALCGNDC_1 | 1744225 | 1753606 | False | Siphoviridae | VOG0296, VOG2507, VOG4544, VOG4556, VOG4568, VOG4553, VOG1210, VOG1158, VOG1159, VOG4621 |
Phigaro v2.4.0 (Database: Jan. 2024 release)