Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DKDKKLMJ_1 | 52020 | 52724 | WalR | 1.70e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DKDKKLMJ_3 | 15659 | 16561 | rep38 | 903 / 903 | 97.90 | CP005943 |
| DKDKKLMJ_6 | 201 | 1136 | rep28 | 937 / 936 | 82.07 | CP005948 |
| DKDKKLMJ_10 | 201 | 1156 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DKDKKLMJ_1 | 0.0 | 1.0 | 0.0 |
| DKDKKLMJ_2 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_3 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_4 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_5 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_6 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_7 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_8 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_9 | 1.0 | 0.0 | 1.0 |
| DKDKKLMJ_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DKDKKLMJ_1 | 40592 | 51099 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| DKDKKLMJ_1 | 556973 | 580204 | False | Siphoviridae | VOG0044, VOG3643, VOG0198, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG4626, VOG8438 |
| DKDKKLMJ_1 | 2056808 | 2079375 | False | Siphoviridae | VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0198 |
| DKDKKLMJ_1 | 2092293 | 2106478 | False | Siphoviridae | VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
Phigaro v2.4.0 (Database: Jan. 2024 release)