Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PEBKNOJE_9 | 47747 | 47043 | WalR | 7.43e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PEBKNOJE_31 | 13725 | 13922 | CspR | 4.08e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PEBKNOJE_1 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_2 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_3 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_4 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_5 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_6 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_7 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_8 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_9 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_10 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_11 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_12 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_13 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_14 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_15 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_16 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_17 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_18 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_19 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_20 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_21 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_22 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_23 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_24 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_25 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_26 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_27 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_28 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_29 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_30 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_31 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_32 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_33 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_34 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_35 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_36 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_37 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_38 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_39 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_40 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_41 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_42 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_43 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_44 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_45 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_46 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_47 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_48 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_49 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_50 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_51 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_52 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_53 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_54 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_55 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_56 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_57 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_58 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_59 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_60 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_61 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_62 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_63 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_64 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_65 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_66 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_67 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_68 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_69 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_70 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_71 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_72 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_73 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_74 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_75 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_77 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_78 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_79 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_80 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_81 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_83 | 0.0 | 1.0 | 0.0 |
| PEBKNOJE_85 | 1.0 | 0.0 | 1.0 |
| PEBKNOJE_86 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PEBKNOJE_2 | 54711 | 61259 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
| PEBKNOJE_14 | 76145 | 81013 | False | Unknown | VOG1309, VOG0186, VOG4566, VOG0189, VOG4688, VOG6623 |
| PEBKNOJE_15 | 73538 | 75296 | False | Unknown | VOG8294 |
| PEBKNOJE_16 | 47909 | 72547 | False | Siphoviridae | VOG1724, VOG0866, VOG4918, VOG0703, VOG7017, VOG0861, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796 |
| PEBKNOJE_20 | 4821 | 15870 | False | Siphoviridae | VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0195, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)