Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DABMKKIO_55 | 182502 | 183272 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 93.75 | 100.00 | EF540343.1 |
| DABMKKIO_94 | 132696 | 133748 | clbC | ARO:3002816 | clbC | 98.00 | 100.00 | AP006627.1 |
| DABMKKIO_26 | 553 | 1398 | Erm(34) | ARO:3000600 | Erm(34) | 100.00 | 100.00 | AY234334.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DABMKKIO_26 | 553 | 1398 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AY234334 |
| DABMKKIO_55 | 182502 | 183272 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.29 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DABMKKIO_26 | 556 | 1398 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| DABMKKIO_94 | 132699 | 133748 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 98.00 | 100.00 | WP_011245929.1 |
| DABMKKIO_55 | 185686 | 186588 | blaBCL | BCL family class A beta-lactamase | BLASTX | 97.34 | 100.00 | WP_065825670.1 |
| DABMKKIO_55 | 182502 | 183269 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 93.75 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DABMKKIO_11 | 283266 | 283916 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.39 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DABMKKIO_19 | 39151 | 38009 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| DABMKKIO_13 | 36106 | 36348 | SpoVG | 2.55e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| DABMKKIO_41 | 1604 | 1801 | CspA | 3.68e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| DABMKKIO_88 | 24396 | 24208 | CspB | 1.86e-25 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DABMKKIO_1 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_2 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_3 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_4 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_5 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_6 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_7 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_8 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_9 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_10 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_11 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_12 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_13 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_14 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_15 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_16 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_17 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_18 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_19 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_20 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_21 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_22 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_23 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_24 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_25 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_26 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_27 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_28 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_29 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_30 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_31 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_32 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_33 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_34 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_35 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_36 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_37 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_38 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_39 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_40 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_41 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_42 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_43 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_44 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_45 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_46 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_47 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_48 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_49 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_50 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_51 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_52 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_53 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_54 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_55 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_56 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_57 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_59 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_60 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_61 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_63 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_64 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_65 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_66 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_67 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_68 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_69 | 1.0 | 0.0 | 1.0 |
| DABMKKIO_77 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_88 | 0.0 | 1.0 | 0.0 |
| DABMKKIO_94 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DABMKKIO_12 | 31690 | 66561 | False | Myoviridae | VOG3087, VOG0397, VOG4552, VOG6440, VOG6242, VOG5447, VOG4100, VOG4571, VOG1328, VOG3699, VOG9315, VOG4773, VOG4688, VOG4685, VOG0749, VOG2377, VOG4589, VOG5660, VOG10055, VOG3890, VOG3891, VOG3892, VOG4910, VOG4865, VOG4885, VOG3894, VOG4691, VOG4862, VOG5384, VOG3390, VOG4705, VOG8439, VOG0136, VOG8236 |
| DABMKKIO_15 | 39156 | 69584 | False | Siphoviridae | VOG10137, VOG4841, VOG4581, VOG4544, VOG3607, VOG4556, VOG4568, VOG4553, VOG7168, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG4910, VOG0801, VOG4660, VOG5384, VOG3390, VOG4705, VOG4619, VOG0641, VOG8236, VOG0018, VOG6116, VOG0866, VOG4602, VOG8520, VOG5353, VOG0468 |
| DABMKKIO_66 | 170537 | 199676 | False | Siphoviridae | VOG8263, VOG6495, VOG9667, VOG8236, VOG0641, VOG7084, VOG4619, VOG5008, VOG0801, VOG0541, VOG4586, VOG0704, VOG4589, VOG0204, VOG3435, VOG4553, VOG4568, VOG4556, VOG4544, VOG0519, VOG4841, VOG0713, VOG2090, VOG0275, VOG3491 |
Phigaro v2.4.0 (Database: Jan. 2024 release)