Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DHGIOLOB_2 | 416711 | 417049 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| DHGIOLOB_2 | 416394 | 416711 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| DHGIOLOB_3 | 411604 | 413247 | vmlR | ARO:3004476 | vmlR | 99.09 | 100.00 | NC_000964.3 |
| DHGIOLOB_4 | 299754 | 300608 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| DHGIOLOB_4 | 282707 | 283909 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| DHGIOLOB_6 | 258736 | 261306 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| DHGIOLOB_3 | 158391 | 158984 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| DHGIOLOB_3 | 107917 | 109356 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| DHGIOLOB_3 | 95104 | 96024 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
| DHGIOLOB_4 | 56363 | 57532 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DHGIOLOB_4 | 299754 | 300608 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| DHGIOLOB_3 | 95104 | 96024 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DHGIOLOB_3 | 411607 | 413247 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 99.09 | 100.00 | WP_003234144.1 |
| DHGIOLOB_4 | 299757 | 300608 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| DHGIOLOB_3 | 95104 | 96021 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| DHGIOLOB_1 | 1028828 | 1029346 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 94.80 | 100.00 | WP_003242546.1 |
| DHGIOLOB_7 | 173592 | 176189 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.29 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DHGIOLOB_7 | 61671 | 62312 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| DHGIOLOB_1 | 536261 | 537442 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| DHGIOLOB_1 | 112869 | 113654 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| DHGIOLOB_1 | 111647 | 112843 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| DHGIOLOB_7 | 220195 | 221958 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| DHGIOLOB_1 | 534636 | 535778 | capA | 0.0 | Capsule | Immune modulation | 98.69 | 100.00 | NP_391469 |
| DHGIOLOB_1 | 535797 | 536246 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| DHGIOLOB_1 | 109033 | 109971 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| DHGIOLOB_1 | 101877 | 109013 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.36 | 100.00 | NP_391076 |
| DHGIOLOB_1 | 109999 | 111618 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DHGIOLOB_11 | 13635 | 12499 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| DHGIOLOB_13 | 11262 | 10393 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| DHGIOLOB_2 | 107942 | 107166 | CodY | 7.07e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DHGIOLOB_1 | 377691 | 378260 | ClpP | 6.43e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| DHGIOLOB_2 | 594276 | 593884 | spxA1 | 5.55e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| DHGIOLOB_2 | 594276 | 593884 | spx | 3.31e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| DHGIOLOB_10 | 20575 | 20817 | SpoVG | 7.50e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| DHGIOLOB_3 | 367811 | 368008 | CspA | 1.91e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DHGIOLOB_7 | 50439 | 50245 | CspD | 5.95e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| DHGIOLOB_7 | 50439 | 50242 | CspB | 1.23e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DHGIOLOB_1 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_2 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_3 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_4 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_5 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_6 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_7 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_8 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_9 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_10 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_11 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_12 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_13 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_14 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_16 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_17 | 1.0 | 0.0 | 1.0 |
| DHGIOLOB_18 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_19 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_20 | 0.0 | 1.0 | 0.0 |
| DHGIOLOB_21 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DHGIOLOB_2 | 446865 | 474146 | False | Myoviridae | VOG4705, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189, VOG3490, VOG9667 |
| DHGIOLOB_4 | 229035 | 246803 | False | Myoviridae | VOG4705, VOG7718, VOG0906, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG4589, VOG0749 |
| DHGIOLOB_5 | 10369 | 43245 | False | Siphoviridae | VOG4972, VOG4574, VOG0641, VOG4705, VOG6243, VOG4612, VOG4626, VOG4619, VOG0801, VOG6163, VOG5910, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5361, VOG4553, VOG4568, VOG4556, VOG3607, VOG1886, VOG4581, VOG4556, VOG0198, VOG4548, VOG0327, VOG4609, VOG0026, VOG1565, VOG0021, VOG1047, VOG7438 |
| DHGIOLOB_5 | 214003 | 235734 | False | Siphoviridae | VOG4574, VOG0641, VOG4705, VOG6243, VOG4612, VOG4626, VOG4619, VOG0801, VOG6163, VOG5910, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5361, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)